IL_3MJB_002

3D structure

PDB id

3MJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

3MJB|1|A|A|6182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3MJB_002 not in the Motif Atlas

Geometric match to IL_3MJA_001

Geometric discrepancy: 0.0536

The information below is about IL_3MJA_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

3MJB|1|A|C|6181
3MJB|1|A|A|6182
3MJB|1|A|G|6183
*
3MJB|1|A|C|6194
3MJB|1|A|G|6195

Current chains

Chain A

Domain 3 of the cricket paralysis virus intergenic region IRES RNA

Nearby chains

Chain B

RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')