IL_3MOJ_002

3D structure

PDB id

3MOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3MOJ|1|A|A|2513
3MOJ|1|A|U|2514
3MOJ|1|A|C|2515
*
3MOJ|1|A|G|2569
3MOJ|1|A|G|2570
3MOJ|1|A|U|2571

Current chains

Chain A

RNA (69-MER)

Nearby chains

Chain B

ATP-dependent RNA helicase dbpA