IL_3MXH_005

3D structure

PDB id

3MXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Native structure of a c-di-GMP riboswitch from V. cholerae

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

AAAC*GU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

3MXH|1|R|A|61
3MXH|1|R|A|62
3MXH|1|R|A|63
3MXH|1|R|C|64
*
3MXH|1|R|G|76
3MXH|1|R|U|77

Current chains

Chain R

c-di-GMP riboswitch

Nearby chains

Chain P

U1 small nuclear ribonucleoprotein A