IL_3O58_052

3D structure

PDB id

3O58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome. This entry consists of the 60S subunit of the first 80S in the asymmetric unit.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAGGUAA*UAAAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20328.1

Basepair signature

Not available

Number of instances in this motif group

4

Unit IDs

3O58|1|1|G|991
3O58|1|1|A|992
3O58|1|1|G|993
3O58|1|1|G|994
3O58|1|1|U|995
3O58|1|1|A|996
3O58|1|1|A|997
*
3O58|1|1|U|1052
3O58|1|1|A|1053
3O58|1|1|A|1054
3O58|1|1|A|1055
3O58|1|1|U|1056
3O58|1|1|A|1057
3O58|1|1|U|1058

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain G

60S ribosomal protein L7-A

Chain T

60S ribosomal protein L21-A