IL_3OTO_018
3D structure
- PDB id
- 3OTO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.69 Å
Loop
- Sequence
- GGAAGAAGC*GUGUAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3OTO_018 not in the Motif Atlas
- Homologous match to IL_6CZR_129
- Geometric discrepancy: 0.1556
- The information below is about IL_6CZR_129
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58819.1
- Basepair signature
- cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3OTO|1|A|G|409
3OTO|1|A|G|410
3OTO|1|A|A|411
3OTO|1|A|A|412
3OTO|1|A|G|413
3OTO|1|A|A|414
3OTO|1|A|A|415
3OTO|1|A|G|416
3OTO|1|A|C|417
*
3OTO|1|A|G|426
3OTO|1|A|U|427
3OTO|1|A|G|428
3OTO|1|A|U|429
3OTO|1|A|A|430
3OTO|1|A|A|431
3OTO|1|A|A|432
3OTO|1|A|C|433
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
Coloring options: