IL_3OTO_058

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_058 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.2971

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3OTO|1|A|G|1401
3OTO|1|A|C|1402
3OTO|1|A|C|1403
3OTO|1|A|C|1404
*
3OTO|1|A|G|1497
3OTO|1|A|U|1498
3OTO|1|A|A|1499
3OTO|1|A|A|1500
3OTO|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12