3D structure

PDB id
3OTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
Experimental method
X-RAY DIFFRACTION
Resolution
3.69 Å

Loop

Sequence
CGAAG*CGAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3OTO_064 not in the Motif Atlas
Homologous match to IL_4LFB_062
Geometric discrepancy: 0.0897
The information below is about IL_4LFB_062
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_77691.5
Basepair signature
cWW-tSH-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

3OTO|1|A|C|1431
3OTO|1|A|G|1432
3OTO|1|A|A|1433
3OTO|1|A|A|1434
3OTO|1|A|G|1435
*
3OTO|1|A|C|1466
3OTO|1|A|G|1467
3OTO|1|A|A|1468
3OTO|1|A|G|1469

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S RIBOSOMAL PROTEIN S20

Coloring options:


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