IL_3OTO_085

3D structure

PDB id

3OTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GGGAG*UGACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OTO_085 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.3859

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3OTO|1|A|G|1415
3OTO|1|A|G|1416
3OTO|1|A|G|1417
3OTO|1|A|A|1418
3OTO|1|A|G|1419
*
3OTO|1|A|U|1481
3OTO|1|A|G|1482
3OTO|1|A|A|1483
3OTO|1|A|C|1484
3OTO|1|A|U|1485

Current chains

Chain A

16S rRNA

Nearby chains