3D structure

PDB id
3OW2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGAGUAC*GGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3OW2_105 not in the Motif Atlas
Homologous match to IL_4V9F_106
Geometric discrepancy: 0.0364
The information below is about IL_4V9F_106
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

3OW2|1|9|G|3075
3OW2|1|9|G|3076
3OW2|1|9|A|3077
3OW2|1|9|G|3078
3OW2|1|9|U|3079
3OW2|1|9|A|3080
3OW2|1|9|C|3081
*
3OW2|1|9|G|3101
3OW2|1|9|G|3102
3OW2|1|9|A|3103
3OW2|1|9|A|3104
3OW2|1|9|A|3105
3OW2|1|9|C|3106

Current chains

Chain 9
5S RIBOSOMAL RNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain H
50S ribosomal protein L10e
Chain V
50S ribosomal protein L30P

Coloring options:


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