IL_3OW2_105

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGUAC*GGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OW2_105 not in the Motif Atlas

Homologous match to IL_4V9F_106

Geometric discrepancy: 0.0364

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3OW2|1|9|G|3075
3OW2|1|9|G|3076
3OW2|1|9|A|3077
3OW2|1|9|G|3078
3OW2|1|9|U|3079
3OW2|1|9|A|3080
3OW2|1|9|C|3081
*
3OW2|1|9|G|3101
3OW2|1|9|G|3102
3OW2|1|9|A|3103
3OW2|1|9|A|3104
3OW2|1|9|A|3105
3OW2|1|9|C|3106

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L10e

Chain V

50S ribosomal protein L30P