IL_3OXD_007

3D structure

PDB id

3OXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of glycine riboswitch with two mutations

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OXD_007 not in the Motif Atlas

Geometric match to IL_5J7L_320

Geometric discrepancy: 0.1337

The information below is about IL_5J7L_320

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

3OXD|1|B|C|35
3OXD|1|B|G|36
*
3OXD|1|B|C|68
3OXD|1|B|U|69
3OXD|1|B|G|70

Current chains

Chain B

domain II of glycine riboswitch

Nearby chains