IL_3OXJ_012

3D structure

PDB id

3OXJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of glycine riboswitch, soaked in Ba2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAG*UGAAAC

Length

11 nucleotides

Bulged bases

3OXJ|1|A|A|65||||4_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OXJ_012 not in the Motif Atlas

Geometric match to IL_3OXE_004

Geometric discrepancy: 0.0678

The information below is about IL_3OXE_004

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_78154.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3OXJ|1|A|G|38||||4_555
3OXJ|1|A|C|39||||4_555
3OXJ|1|A|A|40||||4_555
3OXJ|1|A|A|41||||4_555
3OXJ|1|A|G|42||||4_555
*
3OXJ|1|A|U|61||||4_555
3OXJ|1|A|G|62||||4_555
3OXJ|1|A|A|63||||4_555
3OXJ|1|A|A|64||||4_555
3OXJ|1|A|A|65||||4_555
3OXJ|1|A|C|66||||4_555

Current chains

Chain A

domain II of glycine riboswitch

Nearby chains

Chain B

Glycine riboswitch