IL_3OXM_007

3D structure

PDB id

3OXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of glycine riboswitch, Tl-Acetate soaked

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3OXM_007 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.0917

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

3OXM|1|B|G|35
3OXM|1|B|G|36
*
3OXM|1|B|C|68
3OXM|1|B|U|69
3OXM|1|B|C|70

Current chains

Chain B

domain II of glycine riboswitch

Nearby chains

Chain A

domain II of glycine riboswitch