IL_3P59_003

3D structure

PDB id

3P59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

First Crystal Structure of a RNA Nanosquare

Experimental method

X-RAY DIFFRACTION

Resolution

2.18 Å

Loop

Sequence

GGAACUAC*GCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_47087.1

Basepair signature

cWW-L-cWW-L-cWW-tWH-L-L

Number of instances in this motif group

1

Unit IDs

3P59|1|E|G|51
3P59|1|E|G|52
3P59|1|E|A|53
3P59|1|E|A|54
3P59|1|E|C|55
3P59|1|E|U|56
3P59|1|E|A|57
3P59|1|E|C|58
*
3P59|1|F|G|110
3P59|1|F|C|111
3P59|1|F|C|112

Current chains

Chain E

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')

Chain F

RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*CP*CP*U)-3')

Nearby chains

Chain C

RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU)P*G)-3')

Chain H

RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*CP*CP*U)-3')