IL_3PIP_002

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_002 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.1339

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|G|24
3PIP|1|X|U|25
3PIP|1|X|G|26
3PIP|1|X|G|27
3PIP|1|X|A|28
3PIP|1|X|U|29
3PIP|1|X|G|30
*
3PIP|1|X|C|520
3PIP|1|X|U|521
3PIP|1|X|G|522
3PIP|1|X|A|523
3PIP|1|X|A|524
3PIP|1|X|A|525
3PIP|1|X|C|526

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32