IL_3PIP_012

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

3PIP|1|X|A|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_012 not in the Motif Atlas

Homologous match to IL_7A0S_012

Geometric discrepancy: 0.2194

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

3PIP|1|X|G|600
3PIP|1|X|A|601
3PIP|1|X|C|602
*
3PIP|1|X|G|678
3PIP|1|X|C|679

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15