IL_3PIP_025

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GACCAU*ACGCGUU

Length

13 nucleotides

Bulged bases

3PIP|1|X|C|939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_025 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3115

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

3PIP|1|X|G|861
3PIP|1|X|A|862
3PIP|1|X|C|863
3PIP|1|X|C|864
3PIP|1|X|A|865
3PIP|1|X|U|866
*
3PIP|1|X|A|936
3PIP|1|X|C|937
3PIP|1|X|G|938
3PIP|1|X|C|939
3PIP|1|X|G|940
3PIP|1|X|U|941
3PIP|1|X|U|942

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain T

50S ribosomal protein L27

Chain W

50S ribosomal protein L30