IL_3PIP_029

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CACA*UAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_029 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3409

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|C|882
3PIP|1|X|A|883
3PIP|1|X|C|884
3PIP|1|X|A|885
*
3PIP|1|X|U|917
3PIP|1|X|A|918
3PIP|1|X|U|919
3PIP|1|X|G|920

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25