IL_3PIP_036
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 3PIP|1|X|U|1037, 3PIP|1|X|A|1138, 3PIP|1|X|U|1141, 3PIP|1|X|G|1142
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3PIP_036 not in the Motif Atlas
- Geometric match to IL_7A0S_037
- Geometric discrepancy: 0.1165
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
3PIP|1|X|G|1035
3PIP|1|X|G|1036
3PIP|1|X|U|1037
3PIP|1|X|U|1038
3PIP|1|X|A|1039
3PIP|1|X|A|1040
3PIP|1|X|G|1041
*
3PIP|1|X|C|1135
3PIP|1|X|G|1136
3PIP|1|X|A|1137
3PIP|1|X|A|1138
3PIP|1|X|A|1139
3PIP|1|X|A|1140
3PIP|1|X|U|1141
3PIP|1|X|G|1142
3PIP|1|X|A|1143
3PIP|1|X|U|1144
3PIP|1|X|C|1145
3PIP|1|X|G|1146
3PIP|1|X|G|1147
3PIP|1|X|G|1148
3PIP|1|X|G|1149
3PIP|1|X|C|1150
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: