IL_3PIP_040
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- UCGC*GUGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3PIP_040 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.3259
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
3PIP|1|X|U|1051
3PIP|1|X|C|1052
3PIP|1|X|G|1053
3PIP|1|X|C|1054
*
3PIP|1|X|G|1123
3PIP|1|X|U|1124
3PIP|1|X|G|1125
3PIP|1|X|A|1126
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
Coloring options: