IL_3PIP_050

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_050 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.2085

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

3PIP|1|X|G|1317
3PIP|1|X|A|1318
3PIP|1|X|C|1319
*
3PIP|1|X|G|1638
3PIP|1|X|U|1639
3PIP|1|X|C|1640

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34