IL_3PIP_058

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAUG*CUAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_058 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.3124

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

3PIP|1|X|U|1431
3PIP|1|X|G|1432
3PIP|1|X|A|1433
3PIP|1|X|U|1434
3PIP|1|X|G|1435
*
3PIP|1|X|C|1593
3PIP|1|X|U|1594
3PIP|1|X|A|1595
3PIP|1|X|A|1596
3PIP|1|X|A|1597

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains