IL_3PIP_064

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAAG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_064 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.2263

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3PIP|1|X|C|1491
3PIP|1|X|A|1492
3PIP|1|X|A|1493
3PIP|1|X|G|1494
*
3PIP|1|X|U|1530
3PIP|1|X|C|1531
3PIP|1|X|A|1532
3PIP|1|X|G|1533

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains