IL_3PIP_070

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

3PIP|1|X|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_070 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1165

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3PIP|1|X|C|1703
3PIP|1|X|G|1704
3PIP|1|X|U|1705
3PIP|1|X|A|1706
3PIP|1|X|A|1707
3PIP|1|X|C|1708
*
3PIP|1|X|G|1713
3PIP|1|X|A|1714
3PIP|1|X|A|1715
3PIP|1|X|G|1716
3PIP|1|X|A|1717
3PIP|1|X|A|1718
3PIP|1|X|G|1719

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2