IL_3PIP_073

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGCCAAC*GGACUAUA

Length

15 nucleotides

Bulged bases

3PIP|1|X|C|1792, 3PIP|1|X|C|1808, 3PIP|1|X|U|1812

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|U|1789
3PIP|1|X|G|1790
3PIP|1|X|C|1791
3PIP|1|X|C|1792
3PIP|1|X|A|1793
3PIP|1|X|A|1794
3PIP|1|X|C|1795
*
3PIP|1|X|G|1805
3PIP|1|X|G|1806
3PIP|1|X|A|1807
3PIP|1|X|C|1808
3PIP|1|X|U|1810
3PIP|1|X|A|1811
3PIP|1|X|U|1812
3PIP|1|X|A|1813

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2