IL_3PIP_076

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAGG*CCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_076 not in the Motif Atlas

Geometric match to IL_3CUL_001

Geometric discrepancy: 0.3868

The information below is about IL_3CUL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.8

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3PIP|1|X|G|1837
3PIP|1|X|G|1838
3PIP|1|X|A|1839
3PIP|1|X|A|1840
3PIP|1|X|G|1841
3PIP|1|X|G|1842
*
3PIP|1|X|C|1875
3PIP|1|X|C|1876
3PIP|1|X|C|1877
3PIP|1|X|C|1878

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2