IL_3PIP_094
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GCGAG*CGAGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3PIP_094 not in the Motif Atlas
- Geometric match to IL_7A0S_056
- Geometric discrepancy: 0.2845
- The information below is about IL_7A0S_056
- Detailed Annotation
- Double sheared with near cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
3PIP|1|X|G|2328
3PIP|1|X|C|2329
3PIP|1|X|G|2330
3PIP|1|X|A|2331
3PIP|1|X|G|2332
*
3PIP|1|X|C|2343
3PIP|1|X|G|2344
3PIP|1|X|A|2345
3PIP|1|X|G|2346
3PIP|1|X|C|2347
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L27
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