IL_3PIP_101

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

3PIP|1|X|G|2555, 3PIP|1|X|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_101 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.145

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3PIP|1|X|C|2489
3PIP|1|X|U|2490
3PIP|1|X|C|2491
*
3PIP|1|X|G|2553
3PIP|1|X|C|2554
3PIP|1|X|G|2555
3PIP|1|X|A|2556
3PIP|1|X|G|2557

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32