IL_3PIP_109

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCUCCC*GGGUAG

Length

12 nucleotides

Bulged bases

3PIP|1|X|U|2668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|U|2666
3PIP|1|X|C|2667
3PIP|1|X|U|2668
3PIP|1|X|C|2669
3PIP|1|X|C|2670
3PIP|1|X|C|2671
*
3PIP|1|X|G|2697
3PIP|1|X|G|2698
3PIP|1|X|G|2699
3PIP|1|X|U|2700
3PIP|1|X|A|2701
3PIP|1|X|G|2702

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19