IL_3PIP_112

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GACU*AGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GACU,AGUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_112 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2402

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

3PIP|1|X|G|2786
3PIP|1|X|A|2787
3PIP|1|X|C|2788
3PIP|1|X|U|2789
*
3PIP|1|X|A|2861
3PIP|1|X|G|2862
3PIP|1|X|U|2863
3PIP|1|X|C|2864

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32