Loop IL_3PIP

3D structure

PDB id: 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
Experimental method: X-RAY DIFFRACTION
Resolution: 3.45 Å

Loop

Sequence: CAGGAGGUUG*CACCCUUCAAAGAGUGCGUAAUAGCUCACUG
Length: 41 nucleotides
Bulged bases: 3PIP|1|X|U|1072, 3PIP|1|X|A|1095
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3PIP|1|X|C|1064
3PIP|1|X|A|1065
3PIP|1|X|G|1066
3PIP|1|X|G|1067
3PIP|1|X|A|1068
3PIP|1|X|G|1069
3PIP|1|X|G|1070
3PIP|1|X|U|1071
3PIP|1|X|U|1072
3PIP|1|X|G|1073
*
3PIP|1|X|C|1087
3PIP|1|X|A|1088
3PIP|1|X|C|1089
3PIP|1|X|C|1090
3PIP|1|X|C|1091
3PIP|1|X|U|1092
3PIP|1|X|U|1093
3PIP|1|X|C|1094
3PIP|1|X|A|1095
3PIP|1|X|A|1096
3PIP|1|X|A|1097
3PIP|1|X|G|1098
3PIP|1|X|A|1099
3PIP|1|X|G|1100
3PIP|1|X|U|1101
3PIP|1|X|G|1102
3PIP|1|X|C|1103
3PIP|1|X|G|1104
3PIP|1|X|U|1105
3PIP|1|X|A|1106
3PIP|1|X|A|1107
3PIP|1|X|U|1108
3PIP|1|X|A|1109
3PIP|1|X|G|1110
3PIP|1|X|C|1111
3PIP|1|X|U|1112
3PIP|1|X|C|1113
3PIP|1|X|A|1114
3PIP|1|X|C|1115
3PIP|1|X|U|1116
3PIP|1|X|G|1117

Current chains

Chain X: RIBOSOMAL 23S RNA

Nearby chains

Chain 4: 50S ribosomal protein L36
Chain E: 50S ribosomal protein L6
Chain F: 50S ribosomal protein L11
Chain J: 50S ribosomal protein L16
Chain S: 50S ribosomal protein L25

IL_3PIP_132