IL_3PIP_133

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCGCGGAGAAG*UGGAGCCG

Length

19 nucleotides

Bulged bases

3PIP|1|X|G|1223, 3PIP|1|X|A|1224, 3PIP|1|X|A|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|C|1218
3PIP|1|X|C|1219
3PIP|1|X|G|1220
3PIP|1|X|C|1221
3PIP|1|X|G|1222
3PIP|1|X|G|1223
3PIP|1|X|A|1224
3PIP|1|X|G|1225
3PIP|1|X|A|1226
3PIP|1|X|A|1227
3PIP|1|X|G|1228
*
3PIP|1|X|U|1247
3PIP|1|X|G|1248
3PIP|1|X|G|1249
3PIP|1|X|A|1250
3PIP|1|X|G|1251
3PIP|1|X|C|1252
3PIP|1|X|C|1253
3PIP|1|X|G|1254

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22