IL_3PIP_135

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGGGACGCA*UGCCAAGAAAAGCU

Length

23 nucleotides

Bulged bases

3PIP|1|X|A|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|A|1437
3PIP|1|X|G|1438
3PIP|1|X|G|1439
3PIP|1|X|G|1440
3PIP|1|X|A|1441
3PIP|1|X|C|1442
3PIP|1|X|G|1443
3PIP|1|X|C|1444
3PIP|1|X|A|1445
*
3PIP|1|X|U|1578
3PIP|1|X|G|1579
3PIP|1|X|C|1580
3PIP|1|X|C|1581
3PIP|1|X|A|1582
3PIP|1|X|A|1583
3PIP|1|X|G|1584
3PIP|1|X|A|1585
3PIP|1|X|A|1586
3PIP|1|X|A|1587
3PIP|1|X|A|1588
3PIP|1|X|G|1589
3PIP|1|X|C|1590
3PIP|1|X|U|1591

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2