IL_3PIP_136

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UACG*CGACG

Length

9 nucleotides

Bulged bases

3PIP|1|X|C|1575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_136 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3947

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3PIP|1|X|U|1447
3PIP|1|X|A|1448
3PIP|1|X|C|1449
3PIP|1|X|G|1450
*
3PIP|1|X|C|1572
3PIP|1|X|G|1573
3PIP|1|X|A|1574
3PIP|1|X|C|1575
3PIP|1|X|G|1576

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains