IL_3PIP_138

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUUAAGGAACUUUG*CUGUCUCAAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|1678
3PIP|1|X|U|1679
3PIP|1|X|U|1680
3PIP|1|X|A|1681
3PIP|1|X|A|1682
3PIP|1|X|G|1683
3PIP|1|X|G|1684
3PIP|1|X|A|1685
3PIP|1|X|A|1686
3PIP|1|X|C|1687
3PIP|1|X|U|1688
3PIP|1|X|U|1689
3PIP|1|X|U|1690
3PIP|1|X|G|1691
*
3PIP|1|X|C|1973
3PIP|1|X|U|1974
3PIP|1|X|G|1975
3PIP|1|X|U|1976
3PIP|1|X|C|1977
3PIP|1|X|U|1978
3PIP|1|X|C|1979
3PIP|1|X|A|1980
3PIP|1|X|A|1981
3PIP|1|X|C|1982

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19