IL_3PIP_140

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCGAAAUUCCUUGUC*GACCUGCAC

Length

24 nucleotides

Bulged bases

3PIP|1|X|A|1921, 3PIP|1|X|U|1927, 3PIP|1|X|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|1916
3PIP|1|X|C|1917
3PIP|1|X|G|1918
3PIP|1|X|A|1919
3PIP|1|X|A|1920
3PIP|1|X|A|1921
3PIP|1|X|U|1922
3PIP|1|X|U|1923
3PIP|1|X|C|1924
3PIP|1|X|C|1925
3PIP|1|X|U|1926
3PIP|1|X|U|1927
3PIP|1|X|G|1928
3PIP|1|X|U|1929
3PIP|1|X|C|1930
*
3PIP|1|X|G|1942
3PIP|1|X|A|1943
3PIP|1|X|C|1944
3PIP|1|X|C|1945
3PIP|1|X|U|1946
3PIP|1|X|G|1947
3PIP|1|X|C|1948
3PIP|1|X|A|1949
3PIP|1|X|C|1950

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains