IL_3PIP_145

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCGAGA*UCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_145 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3655

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3PIP|1|X|C|2445
3PIP|1|X|C|2446
3PIP|1|X|G|2447
3PIP|1|X|A|2448
3PIP|1|X|G|2449
3PIP|1|X|A|2450
*
3PIP|1|X|U|2458
3PIP|1|X|C|2459
3PIP|1|X|G|2460
3PIP|1|X|G|2461
3PIP|1|X|C|2462
3PIP|1|X|G|2463

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L16