IL_3PIP_148

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGAAUUGAG*CAAGAUGAGUUCU

Length

22 nucleotides

Bulged bases

3PIP|1|X|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|A|2611
3PIP|1|X|G|2612
3PIP|1|X|A|2613
3PIP|1|X|A|2614
3PIP|1|X|U|2615
3PIP|1|X|U|2616
3PIP|1|X|G|2617
3PIP|1|X|A|2618
3PIP|1|X|G|2619
*
3PIP|1|X|C|2754
3PIP|1|X|A|2755
3PIP|1|X|A|2756
3PIP|1|X|G|2757
3PIP|1|X|A|2758
3PIP|1|X|U|2759
3PIP|1|X|G|2760
3PIP|1|X|A|2761
3PIP|1|X|G|2762
3PIP|1|X|U|2763
3PIP|1|X|U|2764
3PIP|1|X|C|2765
3PIP|1|X|U|2766

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain M

50S ribosomal protein L19