IL_3PIP_153

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIP_153 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.1762

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.2

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

3PIP|1|X|G|877
3PIP|1|X|C|878
3PIP|1|X|A|879
3PIP|1|X|C|880
3PIP|1|X|U|881
*
3PIP|1|X|A|921
3PIP|1|X|A|922
3PIP|1|X|A|923
3PIP|1|X|C|924

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain Y

5S ribosomal RNA; 5S rRNA