IL_3PIP_154

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAGGA*UUCAAAGAGUGCGUAAUAGCUCACUG

Length

31 nucleotides

Bulged bases

3PIP|1|X|A|1095, 3PIP|1|X|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|C|1064
3PIP|1|X|A|1065
3PIP|1|X|G|1066
3PIP|1|X|G|1067
3PIP|1|X|A|1068
*
3PIP|1|X|U|1092
3PIP|1|X|U|1093
3PIP|1|X|C|1094
3PIP|1|X|A|1095
3PIP|1|X|A|1096
3PIP|1|X|A|1097
3PIP|1|X|G|1098
3PIP|1|X|A|1099
3PIP|1|X|G|1100
3PIP|1|X|U|1101
3PIP|1|X|G|1102
3PIP|1|X|C|1103
3PIP|1|X|G|1104
3PIP|1|X|U|1105
3PIP|1|X|A|1106
3PIP|1|X|A|1107
3PIP|1|X|U|1108
3PIP|1|X|A|1109
3PIP|1|X|G|1110
3PIP|1|X|C|1111
3PIP|1|X|U|1112
3PIP|1|X|C|1113
3PIP|1|X|A|1114
3PIP|1|X|C|1115
3PIP|1|X|U|1116
3PIP|1|X|G|1117

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain F

50S ribosomal protein L11