IL_3PIP_167

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

ACCGCUGGU*GCUAUGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|A|2658
3PIP|1|X|C|2659
3PIP|1|X|C|2660
3PIP|1|X|G|2661
3PIP|1|X|C|2662
3PIP|1|X|U|2663
3PIP|1|X|G|2664
3PIP|1|X|G|2665
3PIP|1|X|U|2666
*
3PIP|1|X|G|2702
3PIP|1|X|C|2703
3PIP|1|X|U|2704
3PIP|1|X|A|2705
3PIP|1|X|U|2706
3PIP|1|X|G|2707
3PIP|1|X|U|2708

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19