IL_3PYO_004

3D structure

PDB id

3PYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the first 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

3PYO|1|A|G|101

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51412.1

Basepair signature

Not available

Number of instances in this motif group

2

Unit IDs

3PYO|1|A|G|81
3PYO|1|A|G|82
3PYO|1|A|G|83
3PYO|1|A|A|84
3PYO|1|A|G|85
*
3PYO|1|A|C|97
3PYO|1|A|G|98
3PYO|1|A|U|99
3PYO|1|A|G|101
3PYO|1|A|G|102
3PYO|1|A|A|103
3PYO|1|A|U|104
3PYO|1|A|C|105

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24

Chain Y

50S ribosomal protein L29