IL_3PYO_062
3D structure
- PDB id
- 3PYO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. This file contains the 50S subunit of the first 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCGAAC*GGAGGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 3PYO|1|A|G|1801, 3PYO|1|A|G|1816, 3PYO|1|A|U|1820
- QA status
- QA data not found
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89613.1
- Basepair signature
- Not available
- Number of instances in this motif group
- 3
Unit IDs
3PYO|1|A|U|1798
3PYO|1|A|G|1799
3PYO|1|A|C|1800
3PYO|1|A|G|1801
3PYO|1|A|A|1802
3PYO|1|A|A|1803
3PYO|1|A|C|1804
*
3PYO|1|A|G|1813
3PYO|1|A|G|1814
3PYO|1|A|A|1815
3PYO|1|A|G|1816
3PYO|1|A|G|1817
3PYO|1|A|U|1818
3PYO|1|A|A|1819
3PYO|1|A|U|1820
3PYO|1|A|A|1821
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: