IL_3Q3Z_001
3D structure
- PDB id
- 3Q3Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.51 Å
Loop
- Sequence
- GAAA*UUAGUAGUGCAACCGAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41414.1
- Basepair signature
- cWW-L-R-L-cWW-tWH-cWW-L-L-L-R-L-R-cSH-L-L
- Number of instances in this motif group
- 1
Unit IDs
3Q3Z|1|V|G|12
3Q3Z|1|V|A|13
3Q3Z|1|V|A|14
3Q3Z|1|V|A|15
*
3Q3Z|1|V|U|59
3Q3Z|1|V|U|60
3Q3Z|1|V|A|61
3Q3Z|1|V|G|62
3Q3Z|1|V|U|63
3Q3Z|1|V|A|64
3Q3Z|1|V|G|65
3Q3Z|1|V|U|66
3Q3Z|1|V|G|67
3Q3Z|1|V|C|68
3Q3Z|1|V|A|69
3Q3Z|1|V|A|70
3Q3Z|1|V|C|71
3Q3Z|1|V|C|72
3Q3Z|1|V|G|73
3Q3Z|1|V|A|74
3Q3Z|1|V|C|75
Current chains
- Chain V
- c-di-GMP-II riboswitch
Nearby chains
- Chain A
- Cyclic di-GMP-II riboswitch
Coloring options: