IL_3R8O_088

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

3R8O|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R8O_088 not in the Motif Atlas

Geometric match to IL_4LFB_016

Geometric discrepancy: 0.1241

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

3R8O|1|A|U|375
3R8O|1|A|G|376
*
3R8O|1|A|U|387
3R8O|1|A|G|388
3R8O|1|A|A|389

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16