IL_3R8O_089

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R8O_089 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.1234

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3R8O|1|A|U|409
3R8O|1|A|G|410
3R8O|1|A|A|411
3R8O|1|A|A|412
3R8O|1|A|G|413
3R8O|1|A|A|414
3R8O|1|A|A|415
3R8O|1|A|G|416
*
3R8O|1|A|U|427
3R8O|1|A|G|428
3R8O|1|A|U|429
3R8O|1|A|A|430
3R8O|1|A|A|431
3R8O|1|A|A|432
3R8O|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4