IL_3R8O_091

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

3R8O|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3R8O_091 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0958

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3R8O|1|A|G|446
3R8O|1|A|G|447
3R8O|1|A|A|448
3R8O|1|A|G|449
3R8O|1|A|G|450
*
3R8O|1|A|C|483
3R8O|1|A|G|484
3R8O|1|A|U|485
3R8O|1|A|U|486
3R8O|1|A|A|487
3R8O|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16