IL_3R9W_001

3D structure

PDB id

3R9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Era in complex with MgGDPNP and nucleotides 1506-1542 of 16S ribosomal RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.05 Å

Loop

Sequence

GGGAAC*GGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Quadruple sheared

Broad Annotation

Quadruple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

3R9W|1|B|G|1515
3R9W|1|B|G|1516
3R9W|1|B|G|1517
3R9W|1|B|A|1518
3R9W|1|B|A|1519
3R9W|1|B|C|1520
*
3R9W|1|B|G|1515||||2_455
3R9W|1|B|G|1516||||2_455
3R9W|1|B|G|1517||||2_455
3R9W|1|B|A|1518||||2_455
3R9W|1|B|A|1519||||2_455
3R9W|1|B|C|1520||||2_455

Current chains

Chain B

RNA301

Nearby chains