IL_3RW6_002

3D structure

PDB id

3RW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of nuclear RNA export factor TAP bound to CTE RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UAAGACAG*CAAUGACG

Length

16 nucleotides

Bulged bases

3RW6|1|H|A|13, 3RW6|1|H|A|15, 3RW6|1|H|U|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

3RW6|1|H|U|11
3RW6|1|H|A|12
3RW6|1|H|A|13
3RW6|1|H|G|14
3RW6|1|H|A|15
3RW6|1|H|C|16
3RW6|1|H|A|17
3RW6|1|H|G|18
*
3RW6|1|H|C|43
3RW6|1|H|A|44
3RW6|1|H|A|45
3RW6|1|H|U|46
3RW6|1|H|G|47
3RW6|1|H|A|48
3RW6|1|H|C|49
3RW6|1|H|G|50

Current chains

Chain H

constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA

Nearby chains

Chain A

Nuclear RNA export factor 1