IL_3S1Q_001
3D structure
- PDB id
- 3S1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with ATP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAG*CTC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3S1Q|1|R|G|7
3S1Q|1|R|A|8
3S1Q|1|R|G|9
*
3S1Q|1|T|DC|21
3S1Q|1|T|DT|22
3S1Q|1|T|DC|23
Current chains
- Chain R
- RNA (5'-R(*AP*GP*AP*GP*G)-3')
- Chain T
- DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3')
Nearby chains
- Chain A
- DNA-directed RNA polymerase II subunit RPB1
- Chain B
- DNA-directed RNA polymerase II subunit RPB2
Coloring options: