IL_3S8U_002

3D structure

PDB id

3S8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a 2-azido-adenine-modified RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3S8U_002 not in the Motif Atlas

Geometric match to IL_4NLF_001

Geometric discrepancy: 0.1104

The information below is about IL_4NLF_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3S8U|1|A|C|2652
3S8U|1|A|U|2653
3S8U|1|A|A|2654
3S8U|1|A|G|2655
3S8U|1|A|U|2656
3S8U|1|A|A|2657
3S8U|1|A|C|2658
*
3S8U|1|A|G|2663
3S8U|1|A|G|2664
3S8U|1|A|A|2665
3S8U|1|A|C|2666
3S8U|1|A|C|2667
3S8U|1|A|G|2668

Current chains

Chain A

Ecoli 23 S rRNA Sarcin Ricin loop

Nearby chains